{
  "_id": "6a1022d2acfb0bcc41c8d32d",
  "Package": "lpl",
  "Type": "Package",
  "Title": "Local Partial Likelihood Estimation and Simultaneous Confidence\nBand",
  "Version": "0.14",
  "Date": "2025-08-29",
  "Author": "Bingshu E. Chen [aut, cre], Yicong Liu [aut], Siwei Zhang\n[aut], Teng Wen [aut], Wenyu Jiang [aut]",
  "Maintainer": "Bingshu E. Chen <bingshu.chen@queensu.ca>",
  "Authors@R": "c(person(given = c(\"Bingshu\", \"E.\"), family = \"Chen\", role = c(\"aut\", \"cre\"), email = \"bingshu.chen@queensu.ca\"),\nperson(given = \"Yicong\", family = \"Liu\", role = \"aut\"),\nperson(given = \"Siwei\",  family = \"Zhang\", role = \"aut\"),\nperson(given = \"Teng\",   family = \"Wen\", role = \"aut\"),\nperson(given = \"Wenyu\",  family = \"Jiang\", role = \"aut\"))",
  "Description": "Local partial likelihood estimation by Fan, Lin and\nZhou(2006)<doi:10.1214/009053605000000796> and simultaneous\nconfidence band is a set of tools to test the\ncovariates-biomarker interaction for survival data. Test for\nthe covariates-biomarker interaction using the bootstrap method\nand the asymptotic method with simultaneous confidence band\n(Liu, Jiang and Chen (2015)<doi:10.1002/sim.6563>).",
  "License": "GPL-2",
  "LazyLoad": "yes",
  "Repository": "https://statapps.r-universe.dev",
  "Date/Publication": "2026-05-13 21:11:21 UTC",
  "RemoteUrl": "https://github.com/statapps/lpl",
  "RemoteRef": "HEAD",
  "RemoteSha": "17c1dc96644a56ddac92dcbd79fd621a0b35005a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-13 23:26:33 UTC",
    "User": "root"
  },
  "MD5sum": "f04debda658c469efad199da6a39d337",
  "_user": "statapps",
  "_type": "src",
  "_file": "lpl_0.14.tar.gz",
  "_fileid": "ca81bbb8e68c07c456af47be2d39a51c098bdfd7487572257cc5052b2f5358e8",
  "_filesize": 277856,
  "_sha256": "ca81bbb8e68c07c456af47be2d39a51c098bdfd7487572257cc5052b2f5358e8",
  "_created": "2026-05-13T23:26:33.000Z",
  "_published": "2026-05-22T09:33:06.787Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77353522904,
      "time": 120,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "6983829489"
    },
    {
      "job": 77353522905,
      "time": 114,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "6983827961"
    },
    {
      "job": 77353522941,
      "time": 185,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "6983835240"
    },
    {
      "job": 77353523054,
      "time": 146,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "6983828454"
    },
    {
      "job": 77353522537,
      "time": 170,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6983800018"
    },
    {
      "job": 77353522401,
      "time": 91,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7157353489"
    },
    {
      "job": 77353522993,
      "time": 106,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "6983824560"
    },
    {
      "job": 77353522867,
      "time": 100,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "6983823350"
    },
    {
      "job": 77353522923,
      "time": 87,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "6983820541"
    }
  ],
  "_buildurl": "https://github.com/r-universe/statapps/actions/runs/25832179813",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/statapps/lpl",
  "_commit": {
    "id": "17c1dc96644a56ddac92dcbd79fd621a0b35005a",
    "author": "b3chen <b3chen@local.host>",
    "committer": "b3chen <b3chen@local.host>",
    "message": "add softmax\n",
    "time": 1778706681
  },
  "_maintainer": {
    "name": "Bingshu E. Chen",
    "email": "bingshu.chen@queensu.ca",
    "login": "statapps",
    "uuid": 19355054
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "MASS",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "parallel",
      "role": "Depends"
    },
    {
      "package": "survival",
      "role": "Depends"
    }
  ],
  "_owner": "statapps",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [
    {
      "week": "2025-24",
      "n": 3
    },
    {
      "week": "2025-36",
      "n": 3
    },
    {
      "week": "2025-37",
      "n": 4
    },
    {
      "week": "2025-47",
      "n": 3
    },
    {
      "week": "2026-07",
      "n": 1
    },
    {
      "week": "2026-11",
      "n": 4
    },
    {
      "week": "2026-20",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "biomarker",
    "smooth"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "statapps",
      "count": 2,
      "uuid": 19355054
    }
  ],
  "_userbio": {
    "uuid": 19355054,
    "type": "user",
    "name": "statapps"
  },
  "_downloads": {
    "count": 310,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/lpl"
  },
  "_devurl": "https://github.com/statapps/lpl",
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/lpl.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/statapps/lpl",
  "_realowner": "statapps",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.11",
      "date": "2021-07-26"
    },
    {
      "version": "0.12",
      "date": "2025-04-04"
    },
    {
      "version": "0.13",
      "date": "2025-08-20"
    }
  ],
  "_exports": [
    "asymSCB",
    "brierScore",
    "bstrp",
    "coxcumhaz",
    "coxlogLik",
    "coxScoreHess",
    "csv",
    "csv.coxph",
    "csv.default",
    "csv.lm",
    "csv.matrix",
    "csv.survfit",
    "dsurv",
    "ibs",
    "ibs.coxph",
    "ibs.default",
    "ibs.lple",
    "ibs.Surv",
    "ipcw",
    "IPCW",
    "K_func",
    "lpl.control",
    "lplb",
    "lplb.default",
    "lplb.formula",
    "lplDemoData",
    "lple",
    "lple_fit",
    "lple_se",
    "lple.default",
    "lple.formula",
    "maxTest",
    "multiRoot",
    "numHessian",
    "numJacobian",
    "numScore",
    "oddsRatio",
    "plot.lple",
    "predict.lple",
    "print.lplb",
    "print.lple",
    "psurv",
    "qsurv",
    "rcoxph",
    "residuals.lple",
    "rmst",
    "rmst.coxph",
    "rmst.default",
    "rmst.Surv",
    "rmstFit",
    "rsurv",
    "softmax",
    "survfit.lple"
  ],
  "_help": [
    {
      "page": "lpl-package",
      "title": "Local Partial Likelihood Boostrap test",
      "topics": [
        "lpl-package",
        "lpl-doc"
      ]
    },
    {
      "page": "lpl.control",
      "title": "Auxiliary function for lpl fitting",
      "topics": [
        "lpl.control"
      ]
    },
    {
      "page": "coxcumhaz",
      "title": "Baseline Hazard, Cumulative Hazard and Survival Functions for a Cox Model",
      "topics": [
        "coxcumhaz"
      ]
    },
    {
      "page": "coxlogLik",
      "title": "Compute the Log-Likelihood for a Cox Proportional Hazards Model",
      "topics": [
        "coxlogLik"
      ]
    },
    {
      "page": "coxScoreHess",
      "title": "Calculate the Score vector / Hessian matrix for the Cox model",
      "topics": [
        "coxScoreHess"
      ]
    },
    {
      "page": "ibs",
      "title": "The Brier Score and Integrated Brier Score (IBS)",
      "topics": [
        "brierScore",
        "ibs",
        "ibs.coxph",
        "ibs.default",
        "ibs.lple",
        "ibs.Surv"
      ]
    },
    {
      "page": "ipcw",
      "title": "Inverse probability of censoring weighting (IPCW)",
      "topics": [
        "IPCW",
        "ipcw"
      ]
    },
    {
      "page": "lplb",
      "title": "Local partial likelihood bootstrap (LPLB) method to fit biomarker Models",
      "topics": [
        "bstrp",
        "lplb",
        "lplb.default",
        "lplb.formula",
        "maxTest"
      ]
    },
    {
      "page": "lple",
      "title": "Local partial likelihood estimate (LPLE) method to fit biomarker Models",
      "topics": [
        "asymSCB",
        "K_func",
        "lplDemoData",
        "lple",
        "lple.default",
        "lple.formula",
        "lple_fit",
        "lple_se"
      ]
    },
    {
      "page": "multiRoot",
      "title": "m-Dimensional Root (Zero) Finding",
      "topics": [
        "multiRoot"
      ]
    },
    {
      "page": "numHessian",
      "title": "Calculate Hessian or Information Matrix",
      "topics": [
        "numHessian"
      ]
    },
    {
      "page": "numScore",
      "title": "Calculate the Score / Jacobian Function",
      "topics": [
        "numJacobian",
        "numScore"
      ]
    },
    {
      "page": "plot.lple",
      "title": "The Plot Function of lple",
      "topics": [
        "plot.lple"
      ]
    },
    {
      "page": "predict.lple",
      "title": "predict a lple object",
      "topics": [
        "predict.lple",
        "residuals.lple"
      ]
    },
    {
      "page": "print.lplb",
      "title": "print a lplb object",
      "topics": [
        "print.lplb"
      ]
    },
    {
      "page": "print.lple",
      "title": "print a lple object",
      "topics": [
        "print.lple"
      ]
    },
    {
      "page": "rmst",
      "title": "The restricted mean survival time (RMST)",
      "topics": [
        "rmst",
        "rmst.coxph",
        "rmst.default",
        "rmst.Surv",
        "rmstFit"
      ]
    },
    {
      "page": "rSurv",
      "title": "The Survival Distribution",
      "topics": [
        "dsurv",
        "psurv",
        "qsurv",
        "rcoxph",
        "rSurv",
        "rsurv"
      ]
    },
    {
      "page": "softmax",
      "title": "Softmax Activation Function",
      "topics": [
        "softmax"
      ]
    },
    {
      "page": "survfit.lple",
      "title": "Compute a Survival Curve from a Local Linear Partial Likelihood Estimate.",
      "topics": [
        "survfit.lple"
      ]
    }
  ],
  "_readme": "https://github.com/statapps/lpl/raw/HEAD/README.md",
  "_rundeps": [
    "lattice",
    "MASS",
    "Matrix",
    "survival"
  ],
  "_score": 4.3222192947339195,
  "_indexed": true,
  "_nocasepkg": "lpl",
  "_universes": [
    "statapps"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.14",
      "date": "2026-05-13T23:28:27.000Z",
      "distro": "noble",
      "commit": "17c1dc96644a56ddac92dcbd79fd621a0b35005a",
      "fileid": "b1a02642ae785fd6ab7aa33f2f3cdb12cbd45af3347f058bf9851e3c28cc3669",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/statapps/actions/runs/25832179813"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.14",
      "date": "2026-05-13T23:28:21.000Z",
      "distro": "noble",
      "commit": "17c1dc96644a56ddac92dcbd79fd621a0b35005a",
      "fileid": "a2436e4cf1637587cc3f093772e930138289668e22b05bc8d801cb569bcf869b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/statapps/actions/runs/25832179813"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.14",
      "date": "2026-05-13T23:29:01.000Z",
      "commit": "17c1dc96644a56ddac92dcbd79fd621a0b35005a",
      "fileid": "fa814512b5951abbe4d466dba19a85cd499a37a22b8f02bc81e32e3137cd440d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/statapps/actions/runs/25832179813"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.14",
      "date": "2026-05-13T23:28:31.000Z",
      "commit": "17c1dc96644a56ddac92dcbd79fd621a0b35005a",
      "fileid": "f5ede3263f046c999888fac425bd1262a48b0db4b4ec55b3ff10cb6ad985b8b1",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/statapps/actions/runs/25832179813"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.14",
      "date": "2026-05-13T23:28:00.000Z",
      "commit": "17c1dc96644a56ddac92dcbd79fd621a0b35005a",
      "fileid": "209859719ec67a20c2064db4210d51ef5421fb6b5ff9babd9fe9076631274e28",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/statapps/actions/runs/25832179813"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.14",
      "date": "2026-05-13T23:27:56.000Z",
      "commit": "17c1dc96644a56ddac92dcbd79fd621a0b35005a",
      "fileid": "9b73d80845235cc796975560bb8e736de1420668853fca997fd4ab73fa9ab187",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/statapps/actions/runs/25832179813"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.14",
      "date": "2026-05-13T23:27:43.000Z",
      "commit": "17c1dc96644a56ddac92dcbd79fd621a0b35005a",
      "fileid": "4d41f448e94d7153b0d538aff343d5ae9782b86d0a1609817eb48007fabbb437",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/statapps/actions/runs/25832179813"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.14",
      "date": "2026-05-22T09:32:51.000Z",
      "commit": "17c1dc96644a56ddac92dcbd79fd621a0b35005a",
      "fileid": "9fed8129642fb06863195287d1d24984b50ba98d0a0b5c1df9e4a8e75da25242",
      "status": "success",
      "buildurl": "https://github.com/r-universe/statapps/actions/runs/25832179813"
    }
  ]
}