Package: lpl 0.15

lpl: Local Partial Likelihood Estimation and Simultaneous Confidence Band

Local partial likelihood estimation by Fan, Lin and Zhou(2006)<doi:10.1214/009053605000000796> and simultaneous confidence band is a set of tools to test the covariates-biomarker interaction for survival data. Test for the covariates-biomarker interaction using the bootstrap method and the asymptotic method with simultaneous confidence band (Liu, Jiang and Chen (2015)<doi:10.1002/sim.6563>).

Authors:Bingshu E. Chen [aut, cre], Yicong Liu [aut], Siwei Zhang [aut], Teng Wen [aut], Wenyu Jiang [aut]

lpl_0.15.tar.gz
lpl_0.15.zip(r-4.7-any)lpl_0.15.zip(r-4.6-any)lpl_0.15.zip(r-4.5-any)
lpl_0.15.tgz(r-4.6-any)lpl_0.15.tgz(r-4.5-any)
lpl_0.15.tar.gz(r-4.7-any)lpl_0.15.tar.gz(r-4.6-any)
lpl_0.15.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
lpl/json (API)

# Install 'lpl' in R:
install.packages('lpl', repos = c('https://statapps.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/statapps/lpl/issues

On CRAN:

Conda:

biomarkersmooth

4.32 score 2 packages 1 scripts 507 downloads 52 exports 4 dependencies

Last updated from:3c15c39433. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK302
source / vignettesOK154
linux-releaseOK103
macos-releaseOK95
macos-oldrelOK115
windows-develOK75
windows-releaseOK90
windows-oldrelOK79
wasm-releaseOK97

Exports:asymSCBbrierScorecoxcumhazcoxlogLikcoxScoreHesscsvcsv.coxphcsv.defaultcsv.lmcsv.matrixcsv.survfitdsurvibsibs.coxphibs.defaultibs.lpleibs.SurvipcwIPCWK_funclpl.controllplblplb.defaultlplb.formulalplDemoDatalplelple_fitlple_selple.defaultlple.formulamaxTestmultiRootnumHessiannumJacobiannumScoreoddsRatioplot.lplepredict.lpleprint.lplbprint.lplepsurvqsurvrcoxphresiduals.lplermstrmst.coxphrmst.defaultrmst.SurvrmstFitrsurvsoftmaxsurvfit.lple

Dependencies:latticeMASSMatrixsurvival

Readme and manuals

Help Manual

Help pageTopics
Local Partial Likelihood Boostrap testlpl-package lpl-doc
Asymptotic Critical Value for Simultaneous Confidence BandsasymSCB
Auxiliary function for lpl fittinglpl.control
Baseline Hazard, Cumulative Hazard and Survival Functions for a Cox Modelcoxcumhaz
Compute the Log-Likelihood for a Cox Proportional Hazards ModelcoxlogLik
Calculate the Score vector / Hessian matrix for the Cox modelcoxScoreHess
Print an Object in Comma-Separated (CSV) Stylecsv csv.coxph csv.default csv.lm csv.matrix csv.survfit
The Brier Score and Integrated Brier Score (IBS)brierScore ibs ibs.coxph ibs.default ibs.lple ibs.Surv
Inverse probability of censoring weighting (IPCW)IPCW ipcw
Kernel FunctionK_func
Local partial likelihood bootstrap (LPLB) method to fit biomarker Modelslplb lplb.default lplb.formula maxTest
Local partial likelihood estimate (LPLE) method to fit biomarker ModelslplDemoData lple lple.default lple.formula lple_fit lple_se
m-Dimensional Root (Zero) FindingmultiRoot
Calculate Hessian or Information MatrixnumHessian
Calculate the Score / Jacobian FunctionnumJacobian numScore
Odds Ratios and Confidence Intervals for a Logistic RegressionoddsRatio
The Plot Function of lpleplot.lple
predict a lple objectpredict.lple residuals.lple
print a lplb objectprint.lplb
print a lple objectprint.lple
The restricted mean survival time (RMST)rmst rmst.coxph rmst.default rmst.Surv rmstFit
The Survival Distributiondsurv psurv qsurv rcoxph rsurv
Softmax Activation Functionsoftmax
Compute a Survival Curve from a Local Linear Partial Likelihood Estimate.survfit.lple